Mercurial > repos > rliterman > csp2

directory /CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/bbmap-39.01-1/ @ 69:33d812a61356

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[up] drwxr-xr-x
dir. current/ drwxr-xr-x
dir. jni/ drwxr-xr-x
dir. pipelines/ drwxr-xr-x
dir. resources/ drwxr-xr-x
file README.md 216 -rwxr-xr-x
file Xcalcmem.sh 3265 -rwxr-xr-x
file a_sample_mt.sh 2146 -rwxr-xr-x
file addadapters.sh 2674 -rwxr-xr-x
file addssu.sh 2291 -rwxr-xr-x
file adjusthomopolymers.sh 2114 -rwxr-xr-x
file alltoall.sh 2052 -rwxr-xr-x
file analyzeaccession.sh 1477 -rwxr-xr-x
file analyzegenes.sh 1407 -rwxr-xr-x
file analyzesketchresults.sh 2246 -rwxr-xr-x
file applyvariants.sh 2617 -rwxr-xr-x
file bbcms.sh 6542 -rwxr-xr-x
file bbcountunique.sh 2828 -rwxr-xr-x
file bbduk.sh 20016 -rwxr-xr-x
file bbest.sh 1439 -rwxr-xr-x
file bbfakereads.sh 2976 -rwxr-xr-x
file bbmap.sh 20023 -rwxr-xr-x
file bbmapskimmer.sh 1137 -rwxr-xr-x
file bbmask.sh 4543 -rwxr-xr-x
file bbmerge-auto.sh 1273 -rwxr-xr-x
file bbmerge.sh 13874 -rwxr-xr-x
file bbnorm.sh 10064 -rwxr-xr-x
file bbrealign.sh 3381 -rwxr-xr-x
file bbrename.sh 396 -rwxr-xr-x
file bbsketch.sh 456 -rwxr-xr-x
file bbsplit.sh 6008 -rwxr-xr-x
file bbsplitpairs.sh 3344 -rwxr-xr-x
file bbstats.sh 392 -rwxr-xr-x
file bbversion.sh 517 -rwxr-xr-x
file bbwrap.sh 2057 -rwxr-xr-x
file bitbucket-pipelines.yml 594 -rwxr-xr-x
file bloomfilter.sh 3968 -rwxr-xr-x
file bloomfilterparser.sh 1308 -rwxr-xr-x
file build.xml 2030 -rwxr-xr-x
file build_env_setup.sh 10188 -rwxr-xr-x
file calcmem.sh 5699 -rwxr-xr-x
file calctruequality.sh 5709 -rwxr-xr-x
file callgenes.sh 2359 -rwxr-xr-x
file callpeaks.sh 2378 -rwxr-xr-x
file callvariants.sh 9451 -rwxr-xr-x
file callvariants2.sh 1444 -rwxr-xr-x
file clumpify.sh 11912 -rwxr-xr-x
file commonkmers.sh 1841 -rwxr-xr-x
file comparegff.sh 1123 -rwxr-xr-x
file comparesketch.sh 14905 -rwxr-xr-x
file comparessu.sh 2511 -rwxr-xr-x
file comparevcf.sh 2298 -rwxr-xr-x
file conda_build.sh 379 -rwxr-xr-x
file consect.sh 1972 -rwxr-xr-x
file consensus.sh 3365 -rwxr-xr-x
file countbarcodes.sh 2311 -rwxr-xr-x
file countgc.sh 1199 -rwxr-xr-x
file countsharedlines.sh 2141 -rwxr-xr-x
file crossblock.sh 147 -rwxr-xr-x
file crosscontaminate.sh 2934 -rwxr-xr-x
file cutgff.sh 3012 -rwxr-xr-x
file cutprimers.sh 2069 -rwxr-xr-x
file decontaminate.sh 5014 -rwxr-xr-x
file dedupe.sh 9159 -rwxr-xr-x
file dedupe2.sh 1353 -rwxr-xr-x
file dedupebymapping.sh 2549 -rwxr-xr-x
file demuxbyname.sh 7521 -rwxr-xr-x
file diskbench.sh 1839 -rwxr-xr-x
file estherfilter.sh 1343 -rwxr-xr-x
file explodetree.sh 1629 -rwxr-xr-x
file fetchproks.sh 1963 -rwxr-xr-x
file filterassemblysummary.sh 3131 -rwxr-xr-x
file filterbarcodes.sh 2727 -rwxr-xr-x
file filterbycoverage.sh 2621 -rwxr-xr-x
file filterbyname.sh 3738 -rwxr-xr-x
file filterbysequence.sh 2417 -rwxr-xr-x
file filterbytaxa.sh 3995 -rwxr-xr-x
file filterbytile.sh 4526 -rwxr-xr-x
file filterlines.sh 2586 -rwxr-xr-x
file filterqc.sh 1926 -rwxr-xr-x
file filtersam.sh 2626 -rwxr-xr-x
file filtersilva.sh 1498 -rwxr-xr-x
file filtersubs.sh 1533 -rwxr-xr-x
file filtervcf.sh 3656 -rwxr-xr-x
file fixgaps.sh 2353 -rwxr-xr-x
file fungalrelease.sh 2781 -rwxr-xr-x
file fuse.sh 2466 -rwxr-xr-x
file gbff2gff.sh 846 -rwxr-xr-x
file getreads.sh 1259 -rwxr-xr-x
file gi2ancestors.sh 1797 -rwxr-xr-x
file gi2taxid.sh 3067 -rwxr-xr-x
file gitable.sh 1934 -rwxr-xr-x
file grademerge.sh 971 -rwxr-xr-x
file gradesam.sh 1594 -rwxr-xr-x
file icecreamfinder.sh 6105 -rwxr-xr-x
file icecreamgrader.sh 1055 -rwxr-xr-x
file icecreammaker.sh 3643 -rwxr-xr-x
file idmatrix.sh 2335 -rwxr-xr-x
file idtree.sh 1750 -rwxr-xr-x
file invertkey.sh 1658 -rwxr-xr-x
file kapastats.sh 1668 -rwxr-xr-x
file kcompress.sh 3488 -rwxr-xr-x
file keepbestcopy.sh 2074 -rwxr-xr-x
file khist.sh 1161 -rwxr-xr-x
file kmercountexact.sh 6082 -rwxr-xr-x
file kmercountmulti.sh 2660 -rwxr-xr-x
file kmercoverage.sh 4144 -rwxr-xr-x
file kmerfilterset.sh 2625 -rwxr-xr-x
file kmerlimit.sh 2607 -rwxr-xr-x
file kmerlimit2.sh 2618 -rwxr-xr-x
file kmerposition.sh 1822 -rwxr-xr-x
file kmutate.sh 4099 -rwxr-xr-x
file license.txt 2417 -rwxr-xr-x
file lilypad.sh 2689 -rwxr-xr-x
file loadreads.sh 1538 -rwxr-xr-x
file loglog.sh 2310 -rwxr-xr-x
file makechimeras.sh 1877 -rwxr-xr-x
file makecontaminatedgenomes.sh 2279 -rwxr-xr-x
file makepolymers.sh 2101 -rwxr-xr-x
file mapPacBio.sh 1732 -rwxr-xr-x
file matrixtocolumns.sh 1561 -rwxr-xr-x
file mergeOTUs.sh 1018 -rwxr-xr-x
file mergebarcodes.sh 2609 -rwxr-xr-x
file mergepgm.sh 1365 -rwxr-xr-x
file mergeribo.sh 3348 -rwxr-xr-x
file mergesam.sh 993 -rwxr-xr-x
file mergesketch.sh 3010 -rwxr-xr-x
file mergesorted.sh 2832 -rwxr-xr-x
file metadata_conda_debug.yaml 1324 -rwxr-xr-x
file msa.sh 2554 -rwxr-xr-x
file mutate.sh 3336 -rwxr-xr-x
file muxbyname.sh 2146 -rwxr-xr-x
file phylip2fasta.sh 1738 -rwxr-xr-x
file pileup.sh 7416 -rwxr-xr-x
file plotflowcell.sh 2736 -rwxr-xr-x
file plotgc.sh 1893 -rwxr-xr-x
file postfilter.sh 2812 -rwxr-xr-x
file printtime.sh 933 -rwxr-xr-x
file processfrag.sh 1418 -rwxr-xr-x
file processhi-c.sh 1998 -rwxr-xr-x
file processspeed.sh 926 -rwxr-xr-x
file randomgenome.sh 1556 -rwxr-xr-x
file randomreads.sh 7504 -rwxr-xr-x
file readlength.sh 1503 -rwxr-xr-x
file readqc.sh 1521 -rwxr-xr-x
file reducesilva.sh 1957 -rwxr-xr-x
file reformat.sh 14151 -rwxr-xr-x
file reformatpb.sh 5160 -rwxr-xr-x
file removebadbarcodes.sh 1801 -rwxr-xr-x
file removecatdogmousehuman.sh 2563 -rwxr-xr-x
file removehuman.sh 2552 -rwxr-xr-x
file removehuman2.sh 2563 -rwxr-xr-x
file removemicrobes.sh 2947 -rwxr-xr-x
file removesmartbell.sh 1321 -rwxr-xr-x
file rename.sh 3571 -rwxr-xr-x
file renameimg.sh 1710 -rwxr-xr-x
file repair.sh 2978 -rwxr-xr-x
file replaceheaders.sh 2558 -rwxr-xr-x
file representative.sh 3322 -rwxr-xr-x
file rqcfilter.sh 393 -rwxr-xr-x
file rqcfilter2.sh 13723 -rwxr-xr-x
file runhmm.sh 1061 -rwxr-xr-x
file samtoroc.sh 1937 -rwxr-xr-x
file seal.sh 11245 -rwxr-xr-x
file sendsketch.sh 12439 -rwxr-xr-x
file shred.sh 1668 -rwxr-xr-x
file shrinkaccession.sh 1766 -rwxr-xr-x
file shuffle.sh 2366 -rwxr-xr-x
file shuffle2.sh 2380 -rwxr-xr-x
file sketch.sh 6682 -rwxr-xr-x
file sketchblacklist.sh 3547 -rwxr-xr-x
file sketchblacklist2.sh 3266 -rwxr-xr-x
file sortbyname.sh 3495 -rwxr-xr-x
file splitbytaxa.sh 2728 -rwxr-xr-x
file splitnextera.sh 3826 -rwxr-xr-x
file splitribo.sh 2437 -rwxr-xr-x
file splitsam.sh 1071 -rwxr-xr-x
file splitsam4way.sh 978 -rwxr-xr-x
file splitsam6way.sh 990 -rwxr-xr-x
file stats.sh 3918 -rwxr-xr-x
file statswrapper.sh 2396 -rwxr-xr-x
file streamsam.sh 1758 -rwxr-xr-x
file subsketch.sh 2234 -rwxr-xr-x
file summarizecontam.sh 2054 -rwxr-xr-x
file summarizecoverage.sh 1463 -rwxr-xr-x
file summarizecrossblock.sh 1786 -rwxr-xr-x
file summarizemerge.sh 1025 -rwxr-xr-x
file summarizequast.sh 1218 -rwxr-xr-x
file summarizescafstats.sh 1620 -rwxr-xr-x
file summarizeseal.sh 2135 -rwxr-xr-x
file summarizesketch.sh 1377 -rwxr-xr-x
file synthmda.sh 2485 -rwxr-xr-x
file tadpipe.sh 1841 -rwxr-xr-x
file tadpole.sh 12420 -rwxr-xr-x
file tadwrapper.sh 1659 -rwxr-xr-x
file taxonomy.sh 3136 -rwxr-xr-x
file taxserver.sh 4001 -rwxr-xr-x
file taxsize.sh 1573 -rwxr-xr-x
file taxtree.sh 1626 -rwxr-xr-x
file testfilesystem.sh 1036 -rwxr-xr-x
file testformat.sh 1149 -rwxr-xr-x
file testformat2.sh 4804 -rwxr-xr-x
file tetramerfreq.sh 2084 -rwxr-xr-x
file textfile.sh 990 -rwxr-xr-x
file translate6frames.sh 2786 -rwxr-xr-x
file unicode2ascii.sh 1117 -rwxr-xr-x
file unzip.sh 1304 -rwxr-xr-x
file vcf2gff.sh 891 -rwxr-xr-x
file webcheck.sh 1824 -rwxr-xr-x