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annotate CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/src/tigr/tigrinc.hh @ 69:33d812a61356

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 17:55:14 -0400
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jpayne@69 1 #ifndef __TIGRINC_HH
jpayne@69 2 #define __TIGRINC_HH
jpayne@69 3
jpayne@69 4
jpayne@69 5 #include <cstdio>
jpayne@69 6 #include <cstdlib>
jpayne@69 7 #include <cmath>
jpayne@69 8 #include <cstring>
jpayne@69 9 #include <cctype>
jpayne@69 10 #include <climits>
jpayne@69 11 #include <cfloat>
jpayne@69 12 #include <ctime>
jpayne@69 13 #include <cassert>
jpayne@69 14 #include <cerrno>
jpayne@69 15 #include <unistd.h>
jpayne@69 16
jpayne@69 17
jpayne@69 18 #define TRUE 1
jpayne@69 19 #define FALSE 0
jpayne@69 20 #ifndef EXIT_FAILURE
jpayne@69 21 #define EXIT_FAILURE -1
jpayne@69 22 #endif
jpayne@69 23 #ifndef EXIT_SUCCESS
jpayne@69 24 #define EXIT_SUCCESS 0
jpayne@69 25 #endif
jpayne@69 26
jpayne@69 27 #define INCR_SIZE 10000
jpayne@69 28 #define SMALL_INIT_SIZE 100
jpayne@69 29 #define INIT_SIZE 10000
jpayne@69 30 #define MAX_LINE 1024
jpayne@69 31
jpayne@69 32
jpayne@69 33 FILE * File_Open (const char *, const char *);
jpayne@69 34 void * Safe_calloc (size_t, size_t);
jpayne@69 35 void * Safe_malloc (size_t);
jpayne@69 36 void * Safe_realloc (void *, size_t);
jpayne@69 37 char Complement (char);
jpayne@69 38 bool CompareIUPAC (char, char);
jpayne@69 39 int Read_String (FILE *, char * &, long int &, char [], int);
jpayne@69 40 void Reverse_Complement (char S [], long int Lo, long int Hi);
jpayne@69 41
jpayne@69 42 #endif